Income Tax Scrutiny Notice — Section 143(2) Reply

Expert reply to Income Tax scrutiny notice under Section 143(2). CA representation before AO, document preparation, assessment strategy, and faceless assessment response.

Income Tax Scrutiny — What It Means

An income tax scrutiny notice under Section 143(2) is a formal intimation that the Income Tax Department is examining your return in detail, beyond the routine processing. It does not mean fraud has been detected — most scrutiny cases are risk-based computer selections. However, it does require a systematic, document-backed response to every query raised by the Assessing Officer (AO) or the National Faceless Assessment Centre (NFAC).

First step on receiving a 143(2) notice: Check the date of the notice. If the notice is dated after 3 months from the end of the FY in which the return was filed, it may be time-barred and challengeable. This is a procedural point that can end the assessment.

Scrutiny Notice Types and Scope

Notice TypeSectionPurposeScope
Limited Scrutiny143(2)One or two specific issues identified by CASSRestricted to specified issues only — AO cannot expand scope
Complete Scrutiny143(2)Full examination of returnAll items in return open for scrutiny
Manual Selection143(2)High-value or risk-flagged casesUsually complete scrutiny
E-Proceedings143(2) + Faceless SchemeFaceless assessment via portalComplete or limited — specified in notice

Common Scrutiny Triggers

Financial Triggers

Transaction-Based Triggers

The Scrutiny Process — Timeline

StepTimelineAction Required
Section 143(2) notice issuedWithin 3 months of FY end (return filing FY)Acknowledge notice on IT portal
Section 142(1) questionnaireTypically within 30–60 days of 143(2)Respond with documents within specified time
Additional queriesMultiple rounds — 30 days eachDetailed written response with evidence
Draft Assessment Order (DAR)Before final order — mandatory under faceless schemeFile objections within 30 days
Final Assessment Order (143(3))Within 9 months from end of AYComply or appeal within 30 days

How to Respond to a Scrutiny Questionnaire

Documents Typically Required

Response Strategy

  1. Address every query — silence on any query point is an implicit admission
  2. Provide documentary evidence — every explanation needs a supporting document
  3. Cite applicable sections and case law — for contentious issues (e.g., Section 68 additions)
  4. Establish identity, creditworthiness, and genuineness for cash credits (the three-prong test)
  5. Challenge scope expansion — in limited scrutiny, the AO cannot examine issues beyond those specified in the 143(2) notice
  6. File written submissions before personal hearing (in physical assessment cases)

Challenging Proposed Additions

Section 68 — Unexplained Cash Credits

If the AO proposes to add unexplained cash credits to income, you must establish: (1) Identity of the creditor (PAN, address), (2) Creditworthiness (creditor's income/financial position to lend), (3) Genuineness of the transaction (banking channel, contract, purpose). Failure on any prong results in addition. Counter: cite Supreme Court ruling in CIT v. Orissa Corporation — onus shifts to department if you provide prima facie evidence.

Section 69 — Unexplained Investments

For investments not fully explained from declared income sources. Provide: source of funds (inheritance, gifts, savings, prior year accumulated income), documentation, and return of the source's income.

Section 40A(3) — Cash Payment Disallowance

Payments above ₹10,000 cash to a person in a day are disallowed under Section 40A(3). Exceptions apply for Rule 6DD categories (payments to banks, agricultural payments, remote areas). Cite the exceptions applicable to your case.

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Frequently Asked Questions

What is a Section 143(2) notice?

Section 143(2) of the Income Tax Act is a scrutiny notice served by the Assessing Officer (AO) to the taxpayer within 3 months from the end of the financial year in which the return was filed. It initiates a detailed assessment of the return beyond the summary processing done under Section 143(1).

What triggers a scrutiny notice?

Cases are selected for scrutiny through: (1) CASS (Computer Aided Scrutiny Selection) based on risk parameters, (2) Manual selection by CCIT/DG for specific cases (high-value transactions, mismatches), (3) Survey/search cases, (4) Information received from third parties. Common triggers: large cash deposits, foreign remittances, high deductions, significant difference between declared income and TDS/26AS data.

What is the difference between scrutiny and assessment?

Scrutiny under Section 143(2) leads to regular assessment under Section 143(3). The AO issues questionnaires, the taxpayer provides documents and explanations, and the AO then passes an assessment order either accepting the return or making additions/disallowances.

What is the time limit to complete scrutiny assessment?

Assessment under Section 143(3) must be completed within 9 months from the end of the Assessment Year. For AY 2024-25 (FY 2023-24 returns), the assessment must be completed by December 31, 2025.

What happens in faceless assessment?

Under the Faceless Assessment Scheme, the scrutiny is conducted by the National Faceless Assessment Centre (NaFAC). There is no physical interface between the taxpayer and AO. All communication is through the Income Tax portal. The taxpayer submits responses electronically.

Can I appear personally before the AO?

Under faceless assessment, personal appearance is generally not allowed (the scheme is designed to be faceless). However, in cases where the NFAC decides to revert to physical assessment (complex cases), the taxpayer can appear. Under old-style physical assessments, the taxpayer or CA representative can appear.

What are typical additions in scrutiny assessment?

Common additions: (1) Cash credits under Section 68 (unexplained cash/loans), (2) Unexplained investments under Section 69, (3) Disallowance under Section 40A(3) (cash payments exceeding ₹10,000), (4) MSME payment disallowance under Section 43B(h), (5) Unexplained expenditure under Section 69C, (6) Transfer Pricing adjustments.

Faceless Scrutiny — Specific Best Practices

Under the National Faceless Assessment Centre (NFAC) scheme, the scrutiny response must be comprehensive and self-contained because there is no opportunity for informal clarification. Key NaFAC-specific best practices:

AIS vs 26AS — Which Controls for Scrutiny?

From AY 2021-22, the Annual Information Statement (AIS) on the IT portal replaces Form 26AS as the primary data source for the department. AIS contains much richer data than 26AS: it includes buying/selling of securities, real estate transactions, foreign remittances, dividends, interest, and more. Before responding to any scrutiny notice, download and review your AIS for the relevant year — the AO's queries are likely based on AIS data that doesn't match your return. Common AIS vs return discrepancies to check: securities transactions not declared as capital gains, rental income from AIS not declared, foreign remittances not explained.

Limited Scrutiny — Scope Cannot Be Expanded

A CASS-selected limited scrutiny is restricted to one or two specific issues identified in the Section 143(2) notice itself. The AO cannot convert it to a complete scrutiny or raise issues beyond those specified, without obtaining approval from the PCIT. If the AO is raising queries about items not specified in the 143(2) notice, clearly raise this objection in your response: "The present scrutiny is a limited scrutiny under CASS for [specified issue]. The query at serial number X relates to [different issue] which is not within the scope of this limited scrutiny. This expansion of scope is impermissible without PCIT approval under the CBDT guidelines on CASS selection."

Transfer Pricing in Scrutiny — Domestic and International

If the taxpayer is a company with related party transactions — whether domestic (Section 40A(2) transactions with specified persons) or international (Section 92 transactions with associated enterprises) — these are priority scrutiny areas. The Assessment Unit frequently makes additions under Section 40A(2) for payments to related parties at non-arm's-length prices (e.g., rent paid to promoter's family's property at above-market rates, or salaries paid to promoter family members disproportionate to role). Maintain transfer pricing documentation for all related party transactions above materiality thresholds, even domestic ones.

Section 50C Trap in Property Scrutiny

When an immovable property is sold at a price below the Stamp Duty Value (SDV / circle rate), Section 50C deems the SDV as the sale consideration for capital gains computation in the seller's hands. The AO will compute your capital gains using the SDV even if you actually received less. To challenge this: (a) if the SDV was fixed more than 6 months before the date of agreement, use the SDV at the date of agreement (not registration) — Finance Act 2016 provision; (b) if you believe the SDV itself is wrong, apply to the AO to refer to the District Valuation Officer (DVO) for an independent valuation — if DVO value is lower than SDV, DVO value is used for Section 50C computation.

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